Publications

2013

2012

  • Whole human genome proteogenomic mapping for ENCODE cell line data: identifying protein-coding regions. Khatun J, Yu Y, Wrobel JA, Risk BA, Gunawardena HP, Secrest A, Spitzer WJ, Xie L, Wang L, Chen X, Giddings MC. BMC Genomics. (28 February 2013) – PMID: 23448259
  • An integrated encyclopedia of DNA Elements in the human genome. The ENCODE consortium. Nature 489, 57–74 (06 September 2012) – PMID: 22955616
  • Landscape of transcription in human cells. Djebali S, Davis CA, Merkel A, Dobin A, Lassmann T, Mortazavi AM, Tanzer A, Lagarde J, Risk BA, Lin W, Schlesinger F, Xue C, Marinov GK, Khatun J, Williams BA, Zaleski C, et al. Nature 489, 101–108 (06 September 2012) – PMID: 22955620
  • Long non-coding RNAs are rarely translated. Balázs B, Hui J, Khatun J, Wood E, Risk B, Gundling W, et al. Genome Res. 2012 September; 22(9): 1646-1657. – PMID: 22955977

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Geneffects Software

  • MuSing Applying evolution to musical rhythms
  • Simphile Text pattern similarity detector
  • eVita open source cellular automata

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