Proteogenomics offer huge potential benefits such as the discovery of novel protein coding which could lead to valuable biomarkers or more effective drug targeting.
Until now, proteogenomic analysis has been very laborious requiring segmented, 6-frame translations of the genome, results unification and all of the steps for target/decoy false discovery rate.
Peppy automates each of these steps. All that is required is to give the software the proteomic data, give it the genome, and it performs every necessary task.
Peppy will be freely available and released as open-source software. A manuscript detailing the functionality of the software is published in the Journal of Proteome Research (link).
Sign up to be given a download link to the Peppy software. If you have a specific question, or are interested in collaborating with us for proteogenomic analysis of your proteomic data please contact brian@geneffects.com